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htfa
htfa

User guide

  • Installation
  • Quick start
  • Inputs
  • Optional dependencies
  • Performance
  • Tutorials
    • Quickstart: from a folder of NIfTI files to factors
    • Single-subject TFA
    • Multi-subject HTFA
    • Inputs: NIfTI files, folders, BIDS lists, nilearn images and arrays
    • Fitting 2D images
    • Connectivity and dynamics on real fMRI
    • Word ↔ brain decoding with HTFA (Mitchell et al., 2008)
    • Dynamic ISFC on a movie dataset, with a BrainNet-style animation
    • Plotting and appearance
    • Kernel shapes and mixtures
    • Groups of subjects: a hierarchy of templates
    • Reconstruction statistics and model complexity
    • Comparing HTFA kernels on real multi-subject fMRI
  • Gallery
    • Factor centers of a single-subject TFA
    • The HTFA global template
    • Original data and reconstruction
    • TFA on a real 2D image
    • Recovering known factors
    • Inter-subject functional correlation (ISFC)
    • Sliding-window (dynamic) connectivity
    • Factor connectivity
    • Loading different kinds of input
  • Validation

Reference

  • API reference
    • htfa.fit
    • htfa.TFA
    • htfa.HTFA
    • htfa.HTFAResults
    • htfa.groups
    • htfa.group_permutation_test
    • htfa.groups.GroupTest
    • htfa.groups.group_tree
    • htfa.groups.GroupTree
    • htfa.load
    • htfa.Subject
    • htfa.io.load
    • htfa.io.Subject
    • htfa.static_connectivity
    • htfa.dynamic_connectivity
    • htfa.isfc
    • htfa.plot_network
    • htfa.animate_network
    • htfa.plot_timecourse
    • htfa.brainnet.read_node
    • htfa.brainnet.write_node
    • htfa.brainnet.read_edge
    • htfa.brainnet.write_edge
    • htfa.brainnet.read_nv
    • htfa.brainnet.write_nv
    • htfa.brainnet.read_brainnet_config
    • htfa.brainnet.config_style
    • htfa.brainnet.fetch_mesh
    • htfa.brainnet.load_mesh
    • htfa.brainnet.node_radius
    • htfa.brainnet.effective_nodes
    • htfa.brainnet.mni_mask
    • htfa.brainnet.write_animation
    • htfa.brainnet.image_diff
    • htfa.brainnet.annotate_pair
    • htfa.brainnet.montage
    • htfa.timecourse.global_connectivity
    • htfa.timecourse.edge_count
    • htfa.timecourse.moving_average
    • htfa.datasets.fetch_development_fmri
    • htfa.datasets.DevelopmentFMRI
    • htfa.datasets.development_fmri_files
    • htfa.datasets.load_development_fmri_subject
    • htfa.datasets.regress_confounds
    • htfa.datasets.fetch_tutorial_fit
    • htfa.make_tfa_data
    • htfa.make_htfa_data
    • htfa.make_group_data
    • htfa.synthetic.match_factors
    • htfa.set_autoinstall
    • htfa.require
    • htfa.tfa.standardize_data
    • htfa.tfa.component_factors
    • htfa.stats
    • htfa.stats.FitStatistics
    • htfa.stats.gaussian_fit_statistics
    • htfa.stats.parameter_count
    • htfa.stats.reconstruction_statistics
  • Release overview
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